
Calculations for Molecular Biology and Biotechnology : A Guide to Mathematics in the Laboratory.
Title:
Calculations for Molecular Biology and Biotechnology : A Guide to Mathematics in the Laboratory.
Author:
Stephenson, Frank H.
ISBN:
9780080500614
Personal Author:
Edition:
1st ed.
Physical Description:
1 online resource (319 pages)
Contents:
Front Cover -- Calculations in Molecular Biology and Biotechnology -- Copyright Page -- Contents -- Foreword -- Chapter 1. Scientific Notation and Metric Prefixes -- Introduction -- Significant Digits -- Rounding Off Significant Digits in Calculations -- Exponents and Scientific Notation -- Expressing Numbers in Scientific Notation -- Converting Numbers from Scientific Notation to Decimal Notation -- Adding and Subtracting Numbers Written in Scientific Notation -- Multiplying and Dividing Numbers Written in Scientific Notation -- Metric Prefixes -- Conversion Factors and Canceling Terms -- Chapter 2. Solutions Mixtures and Media -- Introduction -- Calculating Dilutions: A General Approach -- Concentrations by a Factor of X -- Preparing Percent Solutions -- Diluting Percent Solutions -- Moles and Molecular Weight: Definitions -- Molarity -- Diluting Molar Solutions -- Converting Molarity to Percent -- Converting Percent to Molarity -- Normality -- PH -- pKa and the Henderson-Hasselbalch Equation -- Chapter 3. Cell Growth -- The Bacterial Growth Curve -- Manipulating Cell Concentration -- Plotting OD550 vs. Time on a Linear Graph -- Plotting the Logarithm of OD550 vs. Time on a Linear Graph -- Plotting the Log of Cell Concentration vs. Time -- Calculating Generation Time -- Plotting Cell Growth Data on a Semilog Graph -- Determining Generation Time Directly from a Semilog Plot of Cell Concentration vs. Time -- Plotting Cell Density versus OD550 on a Semilog Graph -- The Fluctuation Test -- Fluctuation Test Example -- Variance -- Measuring Mutation Rate -- Measuring Cell Concentration on a Hemocytometer -- Chapter 4. Working with Bacteriophage -- Introduction -- Multiplicity of Infection -- Probabilities and Multiplicity of Infection -- Measuring Phage Titer -- Diluting Bacteriophage -- Measuring Burst Size.
Chapter 5. Quantitation of Nucleic Acids -- Quantitation of Nucleic Acids by Ultraviolet Spectroscopy -- Determining the Concentration of Double-Stranded DNA -- Using Absorbance and an Extinction Coefficient to Calculate Double-Stranded DNA Concentration -- Calculating DNA Concentration as a Millimolar (mM) Amount -- Determining the Concentration of Single-Stranded DNA Molecules -- Oligonucleotide Quantitation -- Measuring RNA Concentration -- Molecular Weight, Molarity, and Nucleic Acid Length -- Estimating DNA Concentration on an Ethidium Bromide-Stained Gel -- Chapter 6. Labeling Nucleic Acids with Radioisotopes -- Introduction -- Using Radioactivity: The Curie -- Estimating Plasmid Copy Number -- Labeling DNA by Nick Translation -- Random Primer Labeling of DNA -- Labeling 3' Termini with Terminal Transferase -- cDNA Synthesis -- Homopolymeric Tailing -- In Vitro Transcription -- Chapter 7. Oligonucleotide Synthesis -- Introduction -- Synthesis Yield -- Measuring Stepwise and Overall Yield by the DMT Cation Assay -- Overall Yield -- Stepwise Yield -- Calculating Micromoles of Nucleoside Added at Each Base Addition Step -- Chapter 8. The Polymerase Chain Reaction -- Introduction -- Template and Amplification -- Exponential Amplification -- PCR Efficiency -- Calculating the Tm of the Target Sequence -- Primers -- Primer Tm -- dNTPs -- DNA Polymerase -- Quantitative PCR -- Chapter 9. Recombinant DNA -- Introduction -- Restriction Endonucleases -- The Frequency of Restriction Endonuclease Cut Sites -- Calculating the Amount of Fragment Ends -- Ligation -- Transformation Efficiency -- Genomic Libraries: How Many Clones Do You Need? -- cDNA Libraries: How Many Clones Are Enough? -- Expression Libraries -- Screening Recombinant Libraries by Hybridization to DNA Probes -- Sizing DNA Fragments by Gel Electrophoresis.
Generating Nested Deletions Using Nuclease BAL 31 -- Chapter 10. Protein -- Introduction -- Protein Quantitation by Measuring Absorbance at 280 nm -- Using Absorbance Coefficients and Extinction Coefficients to Estimate Protein Concentration -- Relating Absorbance Coefficient to Molar Extinction Coefficient -- Determining a Protein's Extinction Coefficient -- Relating Concentration in Milligrams per Milliliter to Molarity -- Protein Quantitation Using A280 When Contaminating Nucleic Acids Are Present -- Protein Quantitation at 205 nm -- Protein Quantitation at 205 nm When Contaminating Nucleic Acids Are Present -- Measuring Protein Concentration by Colorimetric Assay- The Bradford Assay -- Using β-Galactosidase to Monitor Promoter Activity and Gene Expression -- Specific Activity -- The CAT Assay -- Use of Luciferase in a Reporter Assay -- In Vitro Translation-Determining Amino Acid Incorporation -- Chapter 11. Centrifugation -- Introduction -- Relative Centrifugal Force (g Force) -- Converting g Force to Revolutions per Minute -- Determining g Force and Revolutions per Minute by Use of a Nomogram -- Calculating Sedimentation Times -- Chapter 12. Forensic Science -- Introduction -- Alleles and Genotypes -- Calculating Genotype Frequencies -- Calculating Allele Frequencies -- The Hardy-Weinberg Equation and Calculating Expected Genotype Frequencies -- The Chi-Square Test: Comparing Observed to Expected Values -- Sample Variance -- Sample Standard Deviation -- Pi: The Power of Inclusion -- Pd: The Power of Discrimination -- DNA Typing and a Weighted Average -- The Multiplication Rule -- Index.
Abstract:
Calculations in Molecular Biology and Biotechnology: A Guide to Mathematics in the Laboratory is the first comprehensive guide devoted exclusively to calculations encountered in the genetic engineering laboratory. Mathematics, as a vital component of the successful design and interpretation of basic research, is used daily in laboratory work. This guide, written for students, technicians, and scientists, provides example calculations for the most frequently confronted problems encountered in gene discovery and analysis. The text and sample calculations are written in an easy-to-follow format. It is the perfect laboratory companion for anyone working in DNA manipulation and analysis. *A comprehensive guide to calculations for a wide variety of problems encountered in the basic research laboratory. * Example calculations are worked through from start to finish in easy-to-follow steps * Key chapters devoted to calculations encountered when working with bacteria, phage, PCR, radioisotopes, recombinant DNA, centrifugation, oligonucleotides, protein, and forensic science. *Written for students and laboratory technicians but a useful reference for the more experienced researcher. *A valuable teaching resource.
Local Note:
Electronic reproduction. Ann Arbor, Michigan : ProQuest Ebook Central, 2017. Available via World Wide Web. Access may be limited to ProQuest Ebook Central affiliated libraries.
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