Keynote Presentations -- Ontologies and Data Integration in Biomedicine: Success Stories and Challenging Issues -- BioWarehouse: Relational Integration of Eleven Bioinformatics Databases and Formats -- Data Integration in the Life Sciences: Fun, Findings and Frustrations -- Semantic Web for the Life Sciences -- Analyzing the Evolution of Life Science Ontologies and Mappings -- Ontology Design Principles and Normalization Techniques in the Web -- Exploiting Ontology Structure and Patterns of Annotation to Mine Significant Associations between Pairs of Controlled Vocabulary Terms -- Designing and Evaluating Architectures to Integrate Biological Data -- Automatic Methods for Integrating Biomedical Data Sources in a Mediator-Based System -- VisGenome and Ensembl: Usability of Integrated Genome Maps -- An Entity Resolution Framework for Deduplicating Proteins -- New Architectures and Experience on Using Systems -- Semantic Representation and Querying of caBIG Data Services -- SisGen: A CORBA–Based Data Management Program for DNA Sequencing Projects -- Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species -- ENFIN - An Integrative Structure for Systems Biology -- Systems Using Technologies from the Semantic Web for the Life Sciences -- A System for Ontology-Based Annotation of Biomedical Data -- Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse -- OMIE: Ontology Mapping within an Interactive and Extensible Environment -- Chemical Knowledge for the Semantic Web -- Mining Integrated Biological Data -- Combining One-Class Classification Models Based on Diverse Biological Data for Prediction of Protein-Protein Interactions -- Semi Supervised Spectral Clustering for Regulatory Module Discovery -- New Features of Major Resources for Biomolecular Data -- UniProtKB/Swiss-Prot: New and Future Developments -- EBI Proteomics Services -- DILS 2008 Tutorial -- Bio-ontologies Tutorial.