Biological data mining in protein interaction networks
Title:
Biological data mining in protein interaction networks
Author:
Li, Xiao-Li, 1969-
ISBN:
9781605663999
Publication Information:
Hershey, Pa. : IGI Global (701 E. Chocolate Avenue, Hershey, Pennsylvania, 17033, USA), c2009.
Physical Description:
electronic texts (xxviii, 419 p. : ill. ) : digital files.
Contents:
Section 1. Introduction -- 1. Molecular biology of protein-protein interactions for computer scientists / Christian Schönbach -- 2. Data mining for biologists / Koji Tsuda --
Section 2. PPI Network Construction and Cleansing -- 3. Domain-based prediction and analysis of protein interaction networks / Tatsuya Akutsu, Morihiro Hayashida -- 4. Incorporating graph features for predicting protein-protein interactions / Martin Samuel Rao Paradesi, William H. Hsu, Doina Caragea -- 5. Discovering protein-protein interaction sites from sequence and structure / David La, Daisuke Kihara -- 6. Network cleansing : reliable protein interaction networks / Paolo Marcatili, Anna Tramontano --
Section 3. Knowledge Discovery from PPI Networks -- 7. Discovering interaction motifs from protein interaction networks / Willy Hugo -- 8. Discovering network motifs in protein interaction networks / Raymond Wan, Hiroshi Mamitsuka -- 9. Discovering protein complexes in protein interaction networks / Clara Pizzuti, Simona Ester Rombo -- 10. Evolutionary analyses of protein interaction networks / Takashi Makino, Aoife McLysaght --
Section 4. Biological Applications Using PPI Analysis -- 11. Discovering lethal proteins in protein interaction networks / Kar Leong Tew, Xiao-Li Li -- 12. Predicting protein functions from protein interaction networks / Hon Nian Chua, Limsoon Wong -- 13. Protein interactions for functional genomics / Pablo Minguez, Joaquin Dopazo -- 14. Prioritizing disease genes and understanding disease pathways / Xiaoyue Zhao, Lilia M. Iakoucheva, Michael Q. Zhang -- 15. Dynamics of protein-protein interaction network in plasmodium falciparum / Smita Mohanty, Shashi Bhushan Pandit, Narayanaswamy Srinivasan --
Section 5. Tools for Analysis of PPI Networks -- 16. Graphical analysis and visualization tools for protein interaction networks / Sirisha Gollapudi ... [et al.] -- 17. Network querying techniques for PPI network comparison / Valeria Fionda, Luigi Palopoli -- 18. Module finding approaches for protein interaction networks / Tero Aittokallio -- Compilation of References -- About the Contributors -- Index.
Abstract:
"The goal of this book is to disseminate research results and best practices from cross-disciplinary researchers and practitioners interested in, and working on bioinformatics, data mining, and proteomics"--Provided by publisher.
Added Corporate Author:
Electronic Access:
Chapter PDFs via platform: http://services.igi-global.com/resolvedoi/resolve.aspx?doi=10.4018/978-1-60566-398-2