Modeling the activity of single genes / Michael Andrew Gibson and Eric Mjolsness -- A probabilistic model of a prokaryotic gene and its regulation / Michael Andrew Gibson and Jehoshua Bruck -- A logical model of cis-regulatory control in a eukaryotic system / Chiou-Hwa Yuh ... [et al.] -- Trainable gene regulation networks with application to Drosophila pattern formation / Eric Mjolsness -- Genetic network inference in computational models and applications to large-scale gene expression data / Roland Somogyi, Stefanie Fuhrman, and Xiling Wen -- Atomic-level simulation and modeling of biomacromolecules / Nagarajan Vaidehi and William A. Goddard III -- Diffusion / Guy Bormann, Fons Brosens, and Erik De Schutter -- Kinetic models of excitable membranes and synaptic interactions / Alain Destexhe -- Stochastic simulation of cell signaling pathways / Carl A.J.M. Firth and Dennis Bray -- Analysis of complex dynamics in cell cycle regulation / John J. Tyson ... [et al.] -- Simplifying and reducing complex models / Bard Ermentrout.