Grand challenges computational biology / David B. Searls -- A tutorial introduction to computation for biologists / Steven L. Salzberg -- An introduction to biological sequence analysis / Kenneth H. Fasman, Steven L. Salzberg -- An introduction to hidden Markov models for biological sequences / Anders Krogh -- Case-based reasoning driven gene annotation / G. Christian Overton, Juergen Haas -- Classification-based molecular sequence analysis / David J. States, William C. Reisdorf, Jr. -- Computational gene prediction using neural networks and similarity search / Ying Xu, Edward C. Uberwacher --Modeling dependencies in pre-mRNA splicing signals / Christopher B. Burge -- Evolutionary approaches to computational biology / Rebecca J. Parsons -- Decision trees and Markov claims for gene finding / Steven L. Salzberg -- Statistical analysis of protein structures. Using environmental features for multiple purposes / Liping Wei, Jeffrey T. Chang, Russ B. Altman -- Analysis and algorithms for protein sequence-structure alignment / Richard H. Lathrop, Robert G. Rogers Jr., Jadwiga Bienkowska, Barbara K.M. Bryant, Ljubomir J. Buturoviâc, Chrysanthe Gaitatzes, Raman Nambudripad, James V. White, Temple F. Smith -- Threader: protein sequence threading by double dynamic programming / David Jones -- From computer vision to protein structure and association / Haim J. Wolfson, Ruth Nussinov -- Modeling biological data and structure with probabilistic networks / Simon Kasif, Arthur L. Delcher.